VISDB Viral Integration Site DataBase

VIS ID

TVIS44000412

Fusion event

HTLV-1-ZNF747 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

30544375/30533054 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-181b-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6851-5p ; hsa-mir-3190-3p ; hsa-mir-3689d ; hsa-mir-4785 ; hsa-mir-6134 ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-3174 ; hsa-mir-508-5p ; hsa-mir-495-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-1256 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-324-5p ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-20a-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-5006-3p ; hsa-mir-6875-3p ; hsa-mir-4755-5p ; hsa-mir-6844 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4778-3p ; hsa-mir-6832-3p ; hsa-mir-22-5p ; hsa-mir-4684-5p ; hsa-mir-4777-3p ; hsa-mir-570-3p ; hsa-mir-624-3p ; hsa-mir-942-5p ; hsa-mir-1262 ; hsa-mir-1293 ; hsa-mir-1303 ; hsa-mir-1827 ; hsa-mir-193b-5p ; hsa-mir-197-3p ; hsa-mir-362-5p ; hsa-mir-363-5p ; hsa-mir-3713 ; hsa-mir-411-5p ; hsa-mir-4483 ; hsa-mir-4649-3p ; hsa-mir-4701-3p ; hsa-mir-4716-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-483-5p ; hsa-mir-500b-5p ; hsa-mir-501-5p ; hsa-mir-5096 ; hsa-mir-5690 ; hsa-mir-6499-3p ; hsa-mir-6736-5p ; hsa-mir-6741-5p ; hsa-mir-6745 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6808-5p ; hsa-mir-6832-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-890 ; hsa-mir-940

Nearest miRNA

hsa-mir-1225/Upstream/29053; hsa-mir-11401/Downstream/342212;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/43, chr16-CpG: 90/Downstream/1149

Upstream sequence

CTGGTCAGCTCGGGGGACAGGGGGGTGGGCAAAAAAGCGGGGGCGACTCCGGCGCCGGGCCTTGGACAGCTGCTCCAACCCGGCAAAGGGGGCTTGGGGA

Downstream sequence

GCCTTCAGCCCAGGAGACCCGGCGGCCACAGGGTCGGGCTTCTCCAGGGCTCCCGTCCCTTCCCTTTGTCTTTCCTCTTCCTTGTTTCTGGAATCTGCTG