Basic Information
VIS ID
TVIS44000430
Fusion event
HTLV-1-LOC105372577 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
24285616/24304980 (Hg38)
End
24285616/24304980 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372577
Nearest miRNA
hsa-mir-103a-2/Upstream/5834289; hsa-mir-1-1/Downstream/1903206;
Nearest TSS
ENST00000382410/Upstream/105213; ENST00000482637/Downstream/13106;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/316184, chr20-CpG: 176/Downstream/164228
Nearby gene
LINC01721(+80392) ;
Upstream sequence
AAGAAAGCCAAAGCCTAAATTTAATTTTGATTTGGAAAACTTGACTCTTGAACCCCTACTTCCAGTAGCTTCTCATCACTGGTGGAATAAAGTCCAATAC
Downstream sequence
CACACCATGCCTGGAATATGCTTTGTGAGCCCGACTCTGGCTACTTGGCCAACTCCACTCCTTCCCTCCCTCTCCTCTCTGCTAGTGTGTTCTGGCTGTG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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