Basic Information
VIS ID
TVIS44000447
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
91424986/92129169 (Hg38)
End
91424986/92129169 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2112449; hsa-mir-103a-1/Downstream/1491527;
Nearest TSS
ENST00000502646/Upstream/46572; ENST00000511323/Downstream/70368;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/748056, chr5-CpG: 183/Downstream/1441364
Nearby gene
ARRDC3-AS1(No orient, 708454)
Upstream sequence
GAAGGGTTCTTTTCTGTTGTAAAATTTTACGttttgaagtaaaatgtaaatactttgaaatgcactgtttttaaataggcagttcggtgaattttaacta
Downstream sequence
atgtaacaaatccttgtagccagcgcttcaatcaagatatattacctgtgcatctcaccagttaattcctgttcccttatgttaggcaaccactgttctg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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