Basic Information
VIS ID
TVIS44000448
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
50945843/50978130 (Hg38)
End
50945843/50978130 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5780360; hsa-mir-10524/Downstream/1166219;
Nearest TSS
ENST00000381078/Upstream/156345; ENST00000589278/Downstream/621593;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/127412, chr6-CpG: 54/Downstream/1306221
Nearby gene
TFAP2B(+130517) ;
Upstream sequence
gggcaaattattattctgctcaccataGTAATATTATTGTTGTTGAAaacaatagctatttattgaagttacactgtgtgctgaacattgtgctaggtac
Downstream sequence
ttcatagaatttattaacttaatttttgccttacattaactttattttatttttgaggaaactaaggttcagaggggccgagtaacctgcttttgatcac
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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