Basic Information
VIS ID
TVIS44000455
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
33128593/33271075 (Hg38)
End
33128593/33271075 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3313727; hsa-mir-10400/Downstream/7999973;
Nearest TSS
ENST00000518652/Upstream/274897; ENST00000519089/Downstream/90340;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/721692, chr8-CpG: 60/Downstream/201571
Nearby gene
FUT10(-99751) ;
Upstream sequence
AGTAAGAGGCCAGGCCCAGGCATATTGCTACTAGGAAAAACTtagatagattagatagatagttaggtaggtagatcaatcaatagatagatagaGATGG
Downstream sequence
ATATTCTATATGGGTGTGGGTGTACTTTTTGAAGAGGTCTATACAATTCAGGAACTATAAATTCTTTCTTtttattgcagagacgcggtctagctatgtt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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