Basic Information
VIS ID
TVIS44000460
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
34172116/34153999 (Hg38)
End
34172116/34153999 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/1512440; hsa-let-7f-2/Downstream/3869896;
Nearest TSS
ENST00000429181/Upstream/21685; ENST00000329357/Downstream/261538;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/6727, chrX-CpG: 28/Downstream/233791
Nearby gene
FAM47A(-21669) ;
Upstream sequence
cacactactttccacaatggttgaactcatttatgctctcactaacagtgtataagcattcccttttctccacaatttcaccagcatctgttactttttg
Downstream sequence
actttctagtaatagccattctgaccggtgtgaggtagtatctcattatggctttgatttgcatttctgtaatgatcagtgatattgagctcctttgtat
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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