Basic Information
VIS ID
TVIS44000467
Fusion event
HTLV-1-LOC107985452 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
165105116/165135879 (Hg38)
End
165105116/165135879 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985452
Nearest miRNA
hsa-mir-101-1/Upstream/2793239; hsa-mir-1182/Downstream/772042;
Nearest TSS
ENST00000473358/Upstream/323151; ENST00000457106/Downstream/74748;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/18090, chr1-CpG: 79/Downstream/99385
Nearby gene
LMX1A(-65988) ;
Upstream sequence
cttggtcttttgtgaatattcttttcctctttcctactatattggaatttgtttttgagaacttctgtgtaaatgagtcccccttggtcttagtctgtgg
Downstream sequence
agtttttcctaccttttctctgaacttttattctgagtgttttgaaattatatctctaaaatataagggacatatctaactctgccctacactcttgggg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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