Basic Information
VIS ID
TVIS44000470
Fusion event
HTLV-1-chr10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
36835491/36546563 (Hg38)
End
36835491/36546563 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/905311; hsa-mir-107/Downstream/6451000;
Nearest TSS
ENST00000439456/Upstream/107947; ENST00000457804/Downstream/393546;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/781112, chr10-CpG: 51/Downstream/578654
Nearby gene
ANKRD30A(+579294) ;
Upstream sequence
ATAGTCTGGTAGGGCAGCTACGGTTCGTTCTAAAACTTTTGGGAATACATCAGAAAACAAAACAAAACAAAAACACCAGCCCAAATTCAAGTAACACTGG
Downstream sequence
ACCTCACAGAGGGACCACACTTCTTGAGAGATCTTATAACAGCATATCTACTTGCAGGAGTGGAGTTCTGTATGTATATAAAGTAAAAAAGATAAATGAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate