Basic Information
VIS ID
TVIS44000487
Fusion event
HTLV-1-LOC105370214 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
57239244/56665110 (Hg38)
End
57239244/56665110 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LOC105370214
Nearest miRNA
hsa-mir-1297/Upstream/1490562; hsa-mir-1267/Downstream/4534688;
Nearest TSS
ENST00000623511/Upstream/1081586; ENST00000377931/Downstream/475808;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3462900, chr13-CpG: 25/Downstream/475727
Nearby gene
PRR20D(+475808) ;
Upstream sequence
aattttagttttactttttacctttttctcattttttcctgttttctgtgctcttcatttgtttgtgaagatctaaaattctctctgatggcacatttat
Downstream sequence
tcctttatcttttaacttcttgtagtgctggtctgctggaagtgaatctctcatttgttgcagtttctttctgttggtttttttgttttgttatattttg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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