VISDB Viral Integration Site DataBase

VIS ID

TVIS44000506

Fusion event

HTLV-1-SCO1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

10584959/10681642 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-6878-3p ; hsa-mir-6808-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6753-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-498 ; hsa-mir-3117-5p ; hsa-mir-4704-5p ; hsa-mir-655-5p ; hsa-mir-4693-3p ; hsa-mir-7162-3p ; hsa-mir-544b ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-384 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-873-5p ; hsa-mir-589-3p ; hsa-mir-3914 ; hsa-mir-5680 ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-2117 ; hsa-mir-203a-3p ; hsa-mir-6729-3p ; hsa-mir-1229-3p ; hsa-mir-8068 ; hsa-mir-5087 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-5003-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-561-3p ; hsa-mir-5698 ; hsa-mir-7641 ; hsa-mir-143-5p ; hsa-mir-4284 ; hsa-mir-6778-3p ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-5693 ; hsa-mir-6890-3p ; hsa-mir-6516-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-942-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4459 ; hsa-mir-4633-5p ; hsa-mir-4728-5p ; hsa-mir-6087 ; hsa-mir-6500-3p ; hsa-mir-658 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-mir-1253/Upstream/2494638; hsa-mir-10226/Downstream/1400257;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/43165, chr17-CpG: 78/Downstream/15466

Upstream sequence

GAATTCACCTTCTAAGAAATAGCTGCTGCAGGCTTTCATAAAGCAGTCAATGTTTGTGGAATAGCAATGCTTGTTGAAAAATACCTTCATTTTTGAGTAA

Downstream sequence

GATATCTCCTCAGACCCTAAACATGTTACAAACAGACATCACATGGAATTAAGTGTTGGTGAAAAACTGCTTTCTTTAGTAAGTTCTTGGGTTTATTCAT