Basic Information
VIS ID
TVIS44000510
Fusion event
HTLV-1-LINC01443 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
14948591/14948592 (Hg38)
End
14948591/14948592 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01443
Nearest miRNA
hsa-mir-3156-2/Upstream/118350; hsa-mir-1-2/Downstream/6734926;
Nearest TSS
ENST00000575820/Upstream/2325; ENST00000580967/Downstream/21165;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/200360, chr18-CpG: 305/Downstream/48789
Upstream sequence
TTCCTTCTCCCTTAACCATCAAGAAGAGGTACAAAGAGCCAGCGAGGGAGCACCTCAGGTACTTCTCAGGCAGGGAGCACAGTCTCATTGCTGCTGAGCA
Downstream sequence
GGTTAAGAAATTGTCCAGGTTGTGCATCAATTGCTGGCTAAAGAATGACCTTCAGAAGGCCCTGGGATGCCCTACTTGATGCTCTTTTAGCCTCATCTGT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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