Basic Information
VIS ID
TVIS44000529
Fusion event
HTLV-1-LOC105372666 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
51272522/52655983 (Hg38)
End
51272522/52655983 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372666
Nearest miRNA
hsa-mir-103a-2/Upstream/1203006; hsa-mir-1-1/Downstream/1412425;
Nearest TSS
ENST00000382410/Upstream/35145; ENST00000413070/Downstream/15934;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/463697, chr20-CpG: 27/Downstream/317185
Nearby gene
LINC01524(No orient, 5557)
Upstream sequence
CAATCCAtgtcttagtctgttttgtgctactataacagaataccacaagccagataatttataatgaacagaaattgatgtggctcatggtcgttgaggt
Downstream sequence
tttgaagtgcaacagcatggtgctggcatctgatgaggagagccttcttgcagcgtcataacatggtggaaagtatccacaagggcgagagagagcattt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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