Basic Information
VIS ID
TVIS44000534
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
46746902/45326987 (Hg38)
End
46746902/45326987 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1716998; hsa-mir-6815/Downstream/151279;
Nearest TSS
ENST00000624081/Upstream/21730; ENST00000445242/Downstream/9720;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/24095, chr21-CpG: 18/Downstream/18827
Nearby gene
LINC00316(-11603) ;
Upstream sequence
GGAGGCCCCCACTGGCCCTTCCTGATACCTCTGCCCCCTCTTTTCTCCTCTCTCCCTCCTGTCCCACCCCTGGCTGCAGTTGACTCTAACATTTCACTGG
Downstream sequence
CATTCACCCCGGCACAGCTCACAGGCTGCATTGCTACCTCTGGGCTTTGCTGCCTGGTGAGGTGTGGGcatccttcaaagcccagttccccaatcacctc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate