Basic Information
VIS ID
TVIS44000544
Fusion event
HTLV-1-LOC107986094 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
65247108/65261433 (Hg38)
End
65247108/65261433 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986094
Nearest miRNA
hsa-let-7g/Upstream/4643563; hsa-mir-12124/Downstream/1964031;
Nearest TSS
ENST00000440867/Upstream/86475; ENST00000472514/Downstream/119398;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/573152, chr3-CpG: 63/Downstream/95095
Nearby gene
MAGI1(-92798) ;
Upstream sequence
tatacaaaaattaactcaggatggattaaagacttaaatgtaagacctcaaactacacaaatcctagacgaaaacctaggaaatacccttatagacattg
Downstream sequence
gcctaggcaaataatttatgactaagtcctgaaaagcaaatgcaacaaaaataaaaattgttaactgggacctaattaaggagctctgtacagccacgtc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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