Basic Information
VIS ID
TVIS44000553
Fusion event
HTLV-1-LOC105379171 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
129696387/130360694 (Hg38)
End
129696387/130360694 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105379171
Nearest miRNA
hsa-mir-10397/Upstream/963547; hsa-mir-103a-1/Downstream/1857155;
Nearest TSS
ENST00000502646/Upstream/452607; ENST00000507584/Downstream/801933;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/454775, chr5-CpG: 27/Downstream/634384
Nearby gene
CHSY3(+174060) ;
Upstream sequence
CATTAGTACAGATACAAAAGCAAGATTCATTCCCAATCTTATTTTTCTTATTTGTATCCCTCTACCCAGAGCAGCAAAACAGATTTCTAAGATGTAATCA
Downstream sequence
TGTTTAACCTTTTTCTTTGCCTTCCCCTATTAAAATATCTCTTATTCTTTACATATTTTTTTCTTTTTTGCCTTTGGAAACTCATTCTAAATGATTTTCT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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