Basic Information
VIS ID
TVIS44000568
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
112988099/113348044 (Hg38)
End
112988099/113348044 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/10876513; hsa-mir-10399/Downstream/1305301;
Nearest TSS
ENST00000635602/Upstream/229431; ENST00000495516/Downstream/570952;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/557533, chr7-CpG: 223/Downstream/736825
Upstream sequence
tcaggttgttttttatgaagaataagcgagttagtgagtaaagtgcctggcaaatataagctctaaaAATATTTTCTAGAATCTGATTATGTAGTATTTC
Downstream sequence
ATCTAAGAGCTTTCTTAAGGAACAAATACGTGTGTAAAACATGCATGGGAAATATGCTAATTTTAATCCATATAGACTTTAAAATGTTCATTTACTCTTA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate