Basic Information
VIS ID
TVIS44000583
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134608119/135474194 (Hg38)
End
134608119/135474194 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/927483; hsa-mir-105-1/Downstream/1076684;
Nearest TSS
ENST00000429181/Upstream/52251; ENST00000639893/Downstream/46449;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/36965, chrX-CpG: 76/Downstream/46983
Nearby gene
LOC100130607(-8710) ;
Upstream sequence
AGGATGAGTGGGTGCCAGGATGAGGCCTGAAGGGAGGGTCTTGAAAGGCTAACAGATGAGTTTACACTTTCTGCTATTGGAAATCCATGGAGTCATTGAA
Downstream sequence
AAGCTTAGTACAGGGGAGTGAGTGGTGTGTGTGATGTTGAAGGATCATTATTCTGGTATCAGTATGTAGGATGGATAGAAGGCAGGTATCACTGTGGTTA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate