Basic Information
VIS ID
TVIS44000647
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
73656980/75945025 (Hg38)
End
73656980/75945025 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/3091643;
Nearest TSS
ENST00000575820/Upstream/76773; ENST00000581750/Downstream/70836;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/28322, chr18-CpG: 40/Downstream/405390
Nearby gene
LOC339298(+177973) ;
Upstream sequence
gcaattagcagggcgtggtggcatgcacctgtagtcccagctactcgggaggctgaggtggaaggattacccaaggcctaggaggtaggaggtcaggggt
Downstream sequence
acagtgagccatgagccatgatcacaccactgcacttcagcctgggcaacagagtgagaccccatctcaaaaaaaaTGCATTTTTACTCTTAAATTGTAA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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