Basic Information
VIS ID
TVIS44000648
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57810145/57298777 (Hg38)
End
57810145/57298777 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/1910535; hsa-mir-10394/Downstream/1035911;
Nearest TSS
ENST00000633603/Upstream/16890; ENST00000593427/Downstream/5528;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/17922, chr19-CpG: 26/Downstream/18794
Nearby gene
ZNF460(+4709) ;
Upstream sequence
ccaggctggtctcgaactgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagtcactgcgcctggccatatttgtgt
Downstream sequence
ctttagaggtgaagtgagtttcttataggtagcatatagttgggtcattttaaaaacccatttagtatatatcttttaaggtaggaatttaatctgttta
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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