Basic Information
VIS ID
TVIS44000684
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72600499/71734782 (Hg38)
End
72600499/71734782 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5457854; hsa-mir-1243/Downstream/4838786;
Nearest TSS
ENST00000502981/Upstream/395729; ENST00000344413/Downstream/19696;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/547030, chr4-CpG: 30/Downstream/297065
Nearby gene
GC(-6912) ;
Upstream sequence
aggaagaatcaatatcgtgaaaatggccatactgcccaaggtaatttatagattcaatgccatacccatcaagctaccaatgactttcttcacagaattg
Downstream sequence
gaaaaaactacttgaaagttcatatggaaccaaaaaagagcccgcatcaccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctaccgg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate