Basic Information
VIS ID
TVIS44000703
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
85370679/85741363 (Hg38)
End
85370679/85741363 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/9826094; hsa-mir-10399/Downstream/6462652;
Nearest TSS
ENST00000635602/Upstream/266136; ENST00000441140/Downstream/902551;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/554437, chr7-CpG: 45/Downstream/1044941
Nearby gene
SEMA3D(-619432) ;
Upstream sequence
agtctttcttgtgtccaagtacatgtacaatggccatttcttctgacagctgaagattgtttaaaatatggacaattagcatttcgtgggcaagattttg
Downstream sequence
gcctttactattaataagacctggcttagcccaaatttttccaaatgtatgtgctactccaagacatacttagaatcagtataaatagttccttccttgt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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