Basic Information
VIS ID
TVIS44000711
Fusion event
HTLV-1-LOC101927086 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
GRCh37/hg19
Start
73041380/70426464 (Hg38)
End
73041380/70426464 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101927086
Nearest miRNA
hsa-mir-101-2/Upstream/29192629; hsa-let-7a-1/Downstream/383511;
Nearest TSS
ENST00000422679/Upstream/11840; ENST00000436491/Downstream/281583;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6155, chr9-CpG: 50/Downstream/1020133
Nearby gene
KLF9(-11807) ;
Upstream sequence
gattacaggcatgccatgcccagctaatttttagtagagatggggtttcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgag
Downstream sequence
ccactgtgaccatcaggagcattattgaaatctctgatatagaaatgcttctcagaattgtccatcccaagaatgggagacaaagggatttgccctccag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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