Basic Information
VIS ID
TVIS44000715
Fusion event
HTLV-1-LOC107985675 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
7983485/8015444 (Hg38)
End
7983485/8015444 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985675
Nearest miRNA
hsa-mir-3690-1/Upstream/867507; hsa-let-7f-2/Downstream/111521;
Nearest TSS
ENST00000429181/Upstream/8066; ENST00000453306/Downstream/155823;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/87877, chrX-CpG: 144/Downstream/715372
Nearby gene
PNPLA4(-87705) ;
Upstream sequence
CTTAAGAATAATTTCAAAAAAATCCAAGAACTTTTATTTTTCCTAAGCTATTTGAAGACAGTTGTTGaaatacttgtgtgtgtattttctacaaagaagt
Downstream sequence
acattctcttatataatcagagtacagccaccaaaatcaggaactgcagcttggcatgtagctgccacatatccccttcaaagtttgccagttgtcctca
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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