Basic Information
VIS ID
TVIS44000740
Fusion event
HTLV-1-LOC101928039 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22524294/22236343 (Hg38)
End
22524294/22236343 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928039
Nearest miRNA
hsa-mir-1268a/Upstream/11014; hsa-mir-10393/Downstream/961484;
Nearest TSS
ENST00000557528/Upstream/41026; ENST00000622895/Downstream/222560;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/346348, chr15-CpG: 215/Downstream/20991
Nearby gene
MIR1268A(No orient, 11014)
Upstream sequence
tgtttatttttagagagggtcttgctttgttgaccaggcttgagttttagtggtgcaatcaaggctcattgcagccttgatctcctggcctcaagtgatc
Downstream sequence
ctcctgtctcagcctcctgagtagctgggacaacaggcacatgccaccacactcagctaatttttgtattcttATTTTCCTAAGTTCCCCTTCCAAAACC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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