Basic Information
VIS ID
TVIS44000788
Fusion event
HTLV-1-LOC105376360 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
3707544/3665352 (Hg38)
End
3707544/3665352 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC105376360
Nearest miRNA
hsa-mir-5699/Upstream/1589263; hsa-mir-107/Downstream/325808;
Nearest TSS
ENST00000439456/Upstream/128321; ENST00000421629/Downstream/85715;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/108614, chr10-CpG: 19/Downstream/116245
Upstream sequence
CCTGTCCCACATTCTCTTCTGGAAACGCCCCCTCCCCCATCAAGACGCAGCCTTGGACCACTCACCCCTTGCATTTGGGAGGGCTCATGGCTCACAGTCA
Downstream sequence
TGGTGGCACGAGAGGCTGAGCTACCCCAGGCAGGTGAGAGATGCTGCAGTGTCTGCCTTGTTGACAGCACGTGAGCTGTGGGCCCTGACGCCCCACGCAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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