Basic Information
VIS ID
TVIS44000810
Fusion event
HTLV-1-LOC107986638 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
114773586/114452422 (Hg38)
End
114773586/114452422 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LOC107986638
Nearest miRNA
hsa-mir-10398/Upstream/7668202; hsa-mir-1202/Downstream/4616625;
Nearest TSS
ENST00000381078/Upstream/3462; ENST00000417846/Downstream/36259;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/108727, chr6-CpG: 74/Downstream/1648088
Upstream sequence
GCACTGAAGTGAAGTGGGCTTTTTGACTCCAGAAACTAGGCACCTGCAGAATAAAACAAAATATGCAGACTAGTGGGAGTGAATTTGGAATACTGACTGA
Downstream sequence
GACGTGCAGGGTCACGGAAAGACCCAGAAGTGTGAGATTGACTATTATTTTGAAGTAGTATGCAGAAATTTTCTTGTTTTAATAGATTATTTTTATTGAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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