Basic Information
VIS ID
TVIS44000843
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.32
Reference genome
GRCh37/hg19
Start
158738206/159020417 (Hg38)
End
158738206/159020417 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/7454422; hsa-mir-1224/Downstream/262229;
Nearest TSS
ENST00000440867/Upstream/57489; ENST00000397832/Downstream/48835;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/217877, chr3-CpG: 166/Downstream/742740
Nearby gene
IQCJ(+48835) ;
Upstream sequence
tctattgttgccatctttatgtccacaaatacccaatacaagcttccacttacaagtaagaacatgtggtagttttctgtttctgtgttaattcacttag
Downstream sequence
gataatggcctccagctgcatccatgttgctgcaaaggacatgatttcgttcttttttatggcttcatagtgttctatcatgtttatgtactacattttc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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