Basic Information
VIS ID
TVIS44000861
Fusion event
HTLV-1-LINC00689 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
158802459/159009768 (Hg38)
End
158802459/159009768 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7I
Target gene
LINC00689
Nearest miRNA
hsa-mir-10399/Upstream/418072;
Nearest TSS
ENST00000635602/Upstream/75575; ENST00000377633/Downstream/87436;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/3025, chr7-CpG: 23/Downstream/13633
Upstream sequence
CATTGCACCTGCCTCTGCCACCTAGTTTTGGCacctccaatgatggagagctcacttcttcttgagcagcccatttatttttgttcagctctaattgcaa
Downstream sequence
gaaacagcttctattttccacactgaaacctctctccctgcggtttgtatccacaggtcctaattcttcctctggttacaggacaaggacaataataatc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate