Basic Information
VIS ID
TVIS44000871
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
43286762/43059624 (Hg38)
End
43286762/43059624 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/7588138; hsa-mir-10b/Downstream/4318051;
Nearest TSS
ENST00000437798/Upstream/15842; ENST00000623515/Downstream/43067;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/231466, chr2-CpG: 50/Downstream/8450
Nearby gene
LOC107985876(+4412) ;
Upstream sequence
ctaatttcgctcctgaatctacagtttgggcagggcatggtgggaaggttcgtttcttctctgcaaggtggtagctagggcagctcatctgcggacttga
Downstream sequence
gggcccacttgtaagatgattcaggcagtcagcgagaactggctgctggctgggagctcagccagggctgagagctggggcctccgttcctctccacatg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate