Basic Information
VIS ID
TVIS44000876
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
61608537/62977185 (Hg38)
End
61608537/62977185 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-1/Upstream/412172; hsa-mir-124-3/Downstream/201315;
Nearest TSS
ENST00000382410/Upstream/12179; ENST00000455711/Downstream/29850;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/3869, chr20-CpG: 26/Downstream/3747
Nearby gene
SLC17A9(+8588) ;
Upstream sequence
CTTGGGGACTGAGGGGTGGTGGCGACAGACGGCTCACAGCTGAGTCCCTCTCCTGGGTCTCACGCTAGCAAGTTGACGACTGGTCAGCATGGgggacaac
Downstream sequence
cccgaagccacgggggctccagagcacctgtgggccgcagaagcttctgtcggggctgcatcgcaccccaactcctcccccgccctgccttgcccccCAG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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