VISDB Viral Integration Site DataBase

VIS ID

TVIS44000883

Fusion event

HTLV-1-LRRC58 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q13.33

Reference genome

Start

End

120054174/120335327 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-192-5p ; hsa-mir-93-5p ; hsa-mir-95-5p ; hsa-mir-376a-3p ; hsa-mir-376b-3p ; hsa-mir-6715a-3p ; hsa-mir-548a-3p ; hsa-mir-1468-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-576-3p ; hsa-mir-4517 ; hsa-mir-5583-3p ; hsa-mir-590-3p ; hsa-mir-146b-3p ; hsa-mir-874-3p ; hsa-mir-3173-5p ; hsa-mir-4477a ; hsa-mir-6799-3p ; hsa-mir-7976 ; hsa-mir-8066 ; hsa-mir-183-5p ; hsa-mir-4775 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-6086 ; hsa-mir-5096 ; hsa-mir-548av-3p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-4650-3p ; hsa-mir-3529-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6780b-5p ; hsa-mir-625-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-3185 ; hsa-mir-637 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-562 ; hsa-mir-3157-5p ; hsa-mir-6131 ; hsa-mir-7152-3p ; hsa-mir-4691-3p ; hsa-mir-513b-3p ; hsa-mir-3149 ; hsa-mir-8070 ; hsa-mir-411-5p ; hsa-mir-4735-5p ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-1305 ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-8075 ; hsa-mir-4728-3p ; hsa-mir-7108-5p ; hsa-mir-4531 ; hsa-mir-663b ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-4717-3p ; hsa-mir-4802-3p ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-599 ; hsa-mir-4470 ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-506-3p ; hsa-mir-3157-3p ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-6853-3p ; hsa-mir-124-5p ; hsa-mir-4732-5p ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-4677-3p ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-4255 ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-5590-5p ; hsa-mir-4659a-5p ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-767-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-4438 ; hsa-mir-6778-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-122-3p ; hsa-mir-1205 ; hsa-mir-24-3p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-330-3p ; hsa-mir-3613-3p ; hsa-mir-4269 ; hsa-mir-4418 ; hsa-mir-4690-5p ; hsa-mir-484 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-548ac ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-5582-5p ; hsa-mir-5680 ; hsa-mir-6511b-5p ; hsa-mir-6715b-5p ; hsa-mir-6811-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1234-3p ; hsa-mir-150-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4731-5p ; hsa-mir-5089-5p ; hsa-mir-512-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-5589-5p ; hsa-mir-619-5p ; hsa-mir-640 ; hsa-mir-6506-5p ; hsa-mir-7107-5p

Nearest miRNA

hsa-let-7g/Upstream/250679; hsa-mir-12124/Downstream/60341;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/27933, chr3-CpG: 116/Downstream/13325

Upstream sequence

TCCCCTTAAGAATGAGCAATTAAGATTAAGGTCAATTGAAGTAAAATAAAAAGGTGCTGAAACTAGATCAAAGTGCAGATTTGTAAATGTCATGAAGGAC

Downstream sequence

TTTTGCCCTTGCAATCTTGGCGAATTTAGAATACTTAGAGAATGTTCTGATGTGCTAACTGCTGTAAAACCTAGATTTGAAGATTTGGGGGTGGGCAGTG