Basic Information
VIS ID
TVIS44000887
Fusion event
HTLV-1-LOC105371114 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
19381838/19370516 (Hg38)
End
19381838/19370516 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371114
Nearest miRNA
hsa-mir-1225/Upstream/875940; hsa-mir-11401/Downstream/2135533;
Nearest TSS
ENST00000527434/Upstream/2638; ENST00000563675/Downstream/31177;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/186629, chr16-CpG: 59/Downstream/39978
Nearby gene
TMC5(+40023) ;
Upstream sequence
cagtggtgcgcacctgaaatcccagctactcaggagactgagtcaggaggattggatcatttgagcccaggagtttgagaccagccaggggaatgtagtg
Downstream sequence
agaccctgtctcaaaaaagaaaaggaaaGGTTGTgggctcagtggctcacgcctgtaataatcctagcactttgggaggtctgaactcccagccaacatg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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