Basic Information
VIS ID
TVIS44000904
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
29314351/29292804 (Hg38)
End
29314351/29292804 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/815256; hsa-let-7a-2/Downstream/5649033;
Nearest TSS
ENST00000527297/Upstream/132848; ENST00000527727/Downstream/57545;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1182130, chr11-CpG: 25/Downstream/723321
Nearby gene
LINC01616(No orient, 687317)
Upstream sequence
TAATCAATAAAGCGAACCCATTGTCTTACTTAACAAAAAATATCTCAGGTAAATATGTTAAGATTTAAGAGggaactccaatagtgtcataagaacatca
Downstream sequence
tctctattcttgattctgcttgtctctctatggcatttattttcaggttatacaaggtcttaacatggcggccaaagtcttaagtcgtgagttattccag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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