Basic Information
VIS ID
TVIS44000919
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62360390/62592918 (Hg38)
End
62360390/62592918 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-129-2/Upstream/25847; hsa-let-7a-2/Downstream/196897;
Nearest TSS
ENST00000527297/Upstream/741; ENST00000532626/Downstream/3743;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/716, chr11-CpG: 207/Downstream/8064
Nearby gene
MTA2(-285) ;
Upstream sequence
TTACCCTGGCTGCTAGCAACTTCCAGAATTCCTTAAACAAAAGGGAGAGGGGAGTAAGAGGTGGGAAACAGAGGAAGAAACACCCCCATTCCCCTTTCCT
Downstream sequence
ATGGAGGCCACCAGTCATCCAGAAAGCTCATCTCAACTCCTTTGAATGAATCTGGGCCAAGATGGTTCTTGAGCTCCAGCACCACTGGGAGCTGGGGAGC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate