Basic Information
VIS ID
TVIS44000932
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
59057279/58591607 (Hg38)
End
59057279/58591607 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/3365884; hsa-mir-101-1/Downstream/1141620;
Nearest TSS
ENST00000473358/Upstream/13834; ENST00000637377/Downstream/76876;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/13984, chr1-CpG: 271/Downstream/190182
Nearby gene
TACSTD2(-14113) ;
Nearest cancer related gene
TACSTD2(OG, -14113) ;
Upstream sequence
gaaccacccagctgagtccagtcaacacgaaccctgagaggtaataattgttgtaagccattaaggtttagggtggtttgtgatgccacaatagataatc
Downstream sequence
agaagatacctgatattatccccattttagatggggaactgaggctcagggagatcacgagggcttgtccaaagtcatatggctaataaatgctagagcc
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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