Basic Information
VIS ID
TVIS44000942
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
90888882/91259567 (Hg38)
End
90888882/91259567 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7E
Nearest miRNA
hsa-mir-10525/Upstream/15344298; hsa-mir-10399/Downstream/944448;
Nearest TSS
ENST00000635602/Upstream/303775; ENST00000287934/Downstream/4797;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/662517, chr7-CpG: 255/Downstream/4711
Nearby gene
FZD1(+4901) ;
Upstream sequence
AATACAGATGTTATGGAAAATAAGAAATAGCTTATGTAGTAATTTCTGGGTTGGAAATTCAAGAAGAAATGAAATAGAGAACTATGCTGAAAGCTTTAGT
Downstream sequence
AGAGTTATACCTAATGTGTCTCTACAAAGACAATATAATAGACCCCTAGGTGGTGCCACCCAGAAAGAAGGGAATAGTATGGTCTGAGTTTTCTCTACCA
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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