Basic Information
VIS ID
TVIS44000966
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
26809188/26809190 (Hg38)
End
26809188/26809190 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/5297005; hsa-let-7a-1/Downstream/2054436;
Nearest TSS
ENST00000422679/Upstream/7457; ENST00000518614/Downstream/78288;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1130504, chr9-CpG: 69/Downstream/83100
Nearby gene
CAAP1(No orient, 31495)
Upstream sequence
ttaaaattCATTACCTACAATACTAAGAAAAACAGATGATAATACAGTATGTCATTGTAAATGAAAAAGGCCTTGAAGAGTTTTTTTTAACTTACTAGAA
Downstream sequence
GCTTCAATTATCTCCTTTTGAGGAAATAGTTAAGAAGAAAAAATGACAACCTCAATCAACTCACACTGTTAAAAGAAATGAGGGTGGCACCAACAACTAC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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