Basic Information
VIS ID
TVIS44000983
Fusion event
HTLV-1-LOC105377008 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
28140075/28098584 (Hg38)
End
28140075/28098584 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377008
Nearest miRNA
hsa-mir-12127/Upstream/2433645; hsa-let-7g/Downstream/3063120;
Nearest TSS
ENST00000440867/Upstream/39316; ENST00000468330/Downstream/143000;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/368133, chr3-CpG: 60/Downstream/142751
Nearby gene
CMC1(+143049) ;
Upstream sequence
actttttaaaaatggattcaaatgaccatctggaattatagctttcagcctgaaaacttcttatagtattttctgtaaagtatatcagctaccaataaat
Downstream sequence
tctatcagtttttgcctatctgataatgtttttatttcacttttggttttgaaggatagttttactgaatgtaagtctcttggttgacacactgttgaga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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