Basic Information
VIS ID
TVIS44000986
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
End
50219616/49307057 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/6410782; hsa-mir-10400/Downstream/12407731;
Upstream sequence
ctaaaggtttgtaaacacacccattactctgtcaaaacagaccaatcagctctctgtaaaatggaccaatcagctctctgtaaaatggaccagtcagtag
Downstream sequence
gatgtgggtggggccagataagggaataaaagcaggccactcgagcaagcagtggcaattctctcggttccacttgtacagtgtggaagctttgttcttt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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