VISDB Viral Integration Site DataBase

VIS ID

TVIS44000995

Fusion event

HTLV-1-NIPA1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr15

Cytoband

q11.2

Reference genome

Start

End

23045073/22827993 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-96-5p ; hsa-mir-877-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-548aw ; hsa-mir-3686 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3607-3p ; hsa-mir-8084 ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-519a-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-301a-3p ; hsa-mir-6749-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-149-5p ; hsa-mir-7113-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-5196-3p ; hsa-mir-4314 ; hsa-mir-6826-3p ; hsa-mir-3182 ; hsa-mir-6776-5p ; hsa-mir-6861-5p ; hsa-mir-6845-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p

Nearest miRNA

hsa-mir-1268a/Upstream/602664; hsa-mir-10393/Downstream/369834;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/40367, chr15-CpG: 65/Downstream/10571

Upstream sequence

AGAACACGGAAGCTAATCCATGCTGTCGGGAACAGACCTTACACTGAAATGTTCTCTTTCTAGTTTCCTGCTTGGTGGCAGGAAGCCTAAGTCAGCATCG

Downstream sequence

AGCAGGTGTCAGGTCGAAGCGGCACAACGGGAGGGGCTCTGGGAACCACCGGAGTACTCTCTCCCCTCTTCTGGGTTAGCTGAGCAGCTTGAAGAAGAGG