Basic Information
VIS ID
TVIS44001024
Fusion event
HTLV-1-ZG16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29778419/29767098 (Hg38)
End
29778419/29767098 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZG16
miRNAs that regulate target gene
hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-130b-5p ; hsa-mir-877-3p ; hsa-mir-3607-5p ; hsa-mir-96-3p ; hsa-mir-2681-3p
Nearest miRNA
hsa-mir-1225/Upstream/167833; hsa-mir-11401/Downstream/736821;
Nearest TSS
ENST00000527434/Upstream/21092; ENST00000400752/Downstream/11142;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/71961, chr16-CpG: 36/Downstream/17942
Nearby gene
ZG16(+11142) ;
Upstream sequence
aggggctcaccaccatgctcagctaatttttttatttcttgttgagatgggatttcatcatgttgcccaggctggtcttgaactcctaagctcaagtgat
Downstream sequence
ccacccacctcagcctcctaaaatgctaggattacaagcgtgagccactgtacctggccaacacacttagcagtggcttttatccactccaccaggctAT
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate