Basic Information
VIS ID
TVIS44001035
Fusion event
HTLV-1-chr12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
91405404/91011627 (Hg38)
End
91405404/91011627 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/4266478; hsa-mir-1178/Downstream/3550162;
Nearest TSS
ENST00000382841/Upstream/6601; ENST00000551571/Downstream/46356;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/57308, chr12-CpG: 128/Downstream/1133307
Nearby gene
EPYC(-6601) ;
Upstream sequence
gttatgtttttctattcttacatatgtctgtccaaggtgaataaatatactttactggtcagatttacagttgtattctcagtgcctaagatagtccttg
Downstream sequence
actcaaagtttatgctcagtatttttgaatgaattaatCAATTAATGAAATCATGAATTAATAAATAATGAATAACCATTATGATTTGCTTGAGCTATTC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate