Basic Information
VIS ID
TVIS44001041
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
52013272/53935911 (Hg38)
End
52013272/53935911 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/3167181; hsa-mir-1250/Downstream/2955359;
Nearest TSS
ENST00000595228/Upstream/113010; ENST00000574744/Downstream/963476;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/178372, chr17-CpG: 42/Downstream/964594
Nearby gene
KIF2B(+110699) ;
Upstream sequence
caaagatttacgggacctgaagataggtcagtagaaattatctaacttaaacacaaagaggacaaaagagtgaaaaagcaaagaacacaaataaacaaca
Downstream sequence
acaacaaaaacagcacagagcatccaagaatgtgaacatcatccaactctttcctatacacataattgcaatatatgaagaacggaacagaatacatttg
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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