Basic Information
VIS ID
TVIS44001046
Fusion event
HTLV-1-LINC00994 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
64065497/64079821 (Hg38)
End
64065497/64079821 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00994
Nearest miRNA
hsa-let-7g/Upstream/3461951; hsa-mir-12124/Downstream/3145643;
Nearest TSS
ENST00000440867/Upstream/11857; ENST00000460946/Downstream/7542;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/56204, chr3-CpG: 24/Downstream/188036
Upstream sequence
CAAGCTTGCCCAATCTTATTATCCTGGTTACAAGTATAACAATTAAAAGACATTTGTAGACATTACAGTGTTGGGAACAAATATAGCTTTTTAAAAAAGG
Downstream sequence
AAAGTAAACTTACTCATGTGCTTGCCAAGTCTCAATCAAAAGGTGCCATATGGAAATGGTATAAATATGATTGGCCTCCAGCACTGGCCAACTTTGAATC
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate