VISDB Viral Integration Site DataBase

VIS ID

TVIS44001070

Fusion event

HTLV-1-GLP2R integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

9745358/9842041 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1273e ; hsa-mir-489-3p ; hsa-mir-3913-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-5582-5p ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-139-5p ; hsa-mir-4712-3p ; hsa-mir-5692a ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-383-3p ; hsa-mir-525-3p ; hsa-mir-524-3p ; hsa-mir-513b-5p ; hsa-mir-4662a-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-3613-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-1247-3p ; hsa-mir-219a-1-3p ; hsa-mir-219b-3p ; hsa-mir-302f ; hsa-mir-3174 ; hsa-mir-3192-5p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4746-3p ; hsa-mir-4792 ; hsa-mir-490-3p ; hsa-mir-571 ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p ; hsa-mir-7851-3p

Nearest miRNA

hsa-mir-1253/Upstream/1655037; hsa-mir-10226/Downstream/2239858;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/70093, chr17-CpG: 21/Downstream/62709

Upstream sequence

cattttcacatacactttcatttaatcctttcccaaatcatggagagttggtaccaattattatccccagttcctgatgaaaacagaggaaggcttagag

Downstream sequence

gttaggagagctaggcccaggacacactcatgcatggatggcgcatccggcttcagccccagtctgtcagccacgtgcccaccactttctcttctgcatg