Basic Information
VIS ID
TVIS44001072
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
80979190/80752065 (Hg38)
End
80979190/80752065 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/885482; hsa-mir-10b/Downstream/5031535;
Nearest TSS
ENST00000437798/Upstream/133288; ENST00000448431/Downstream/118125;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/429392, chr2-CpG: 93/Downstream/442015
Nearby gene
CTNNA2(+103202) ;
Nearest cancer related gene
CTNNA2(TSG, +103202) ;
Upstream sequence
tgcagggagaatctttaagtgattcattcaaatagttatagggttatccgtataaattatttacttcattctgagcaaatgtggtagtttgtttttccgg
Downstream sequence
gaagtagttcatttcatctaagttgtcggagatagctgtgaaaaacttcccatggtaatccctttttacccattttttgtctgcagggtctatagttata
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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