Basic Information
VIS ID
TVIS44001093
Fusion event
HTLV-1-ANKS1B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
99947717/99553939 (Hg38)
End
99947717/99553939 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1558491; hsa-mir-1178/Downstream/635945;
Nearest TSS
ENST00000382841/Upstream/167642; ENST00000324341/Downstream/93814;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/658343, chr12-CpG: 85/Downstream/430526
Upstream sequence
tcaggtggccgaagactgtccaattagaatgtctttacgttagcttcagtgactggttcaaggttgaacaaatgaaccacgatggtctactgtgtctcaa
Downstream sequence
tcctgggactttttggacaattgagaaacattttttatggtggggtcacaatgtaagtcttcagctgctagtagaaaccatgtagagaaaaactgcctgt
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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