Basic Information
VIS ID
TVIS44001132
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
101148720/100683164 (Hg38)
End
101148720/100683164 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1E
Nearest miRNA
hsa-mir-101-1/Upstream/401856; hsa-mir-11399/Downstream/7214059;
Nearest TSS
ENST00000473358/Upstream/42551; ENST00000370119/Downstream/36578;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/142835, chr1-CpG: 21/Downstream/211868
Nearby gene
LINC01349(No orient, 36160)
Upstream sequence
agattgcagcattgttttcctctgagccttggaatcctcaacacagaacaccccgtagtaactatgaatagactgtagttgacaaccaagttaaaacctt
Downstream sequence
tgcaatatccatgAGCCCctatatgccaaacactgattatacgaaggtgaataatacacaatctttgcattcaaggccactgcatgctagtaggtaaaag
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
Curate