Basic Information
VIS ID
TVIS44001137
Fusion event
HTLV-1-PANX3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
124485928/124616032 (Hg38)
End
124485928/124616032 (Hg38)
Orient
+
Location type
Intronic
Target gene
PANX3
Nearest miRNA
hsa-let-7a-2/Upstream/1234520; hsa-mir-3167/Downstream/2372426;
Nearest TSS
ENST00000527297/Upstream/4542; ENST00000452080/Downstream/6804;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/874195, chr11-CpG: 44/Downstream/6736
Upstream sequence
acccacaggaggcggagcttgcagtgagcagagatcgcaccacggcactccagcctgggcaagagagcgagactcaatctcaataaataaataaataaat
Downstream sequence
aaataaaAATCTTTACAAGTAGAGATTTTACTGTAGGCAAAATAGTTGGCCCAACCCTGCTAGGTGTGGTAAGTATGATGAGGAAACCTGAAGAAAAGTG
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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