Basic Information
VIS ID
TVIS44001151
Fusion event
HTLV-1-LOC102724419 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28811663
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
163880976/164163188 (Hg38)
End
163880976/164163188 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724419
Nearest miRNA
hsa-let-7g/Upstream/3758363; hsa-mir-1224/Downstream/8283;
Nearest TSS
ENST00000440867/Upstream/688121; ENST00000494915/Downstream/522888;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/158681, chr3-CpG: 23/Downstream/3216951
Nearby gene
MIR1263(-8283) ;
Upstream sequence
ggctgctgcctttctttcagagatgccctgcccagagaggaggaatctagagatgcagtttggctacagcggctttgctgcactacagtgggttccacac
Downstream sequence
acagttcgaacttcctggaggctttgtttacaatgtgaggagaaaaccacctacttaagcctcggctctctccccaccaagttcaaatatcccaggtcga
Reference
Artesi, M., et al.Monitoring molecular response in adult T-cell leukemia by high-throughput sequencing analysis of HTLV-1 clonality. Leukemia ,2017,31(11): 2532-2535.
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